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    AT1G10090 Early-responsive to dehydration stress protein (ERD4) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837544, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G10090
    Gene description
    Early-responsive to dehydration stress protein (ERD4)
    Primary source
    Araport:AT1G10090
    Locus tag
    AT1G10090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T27I1.11; T27I1_11
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (3290311..3296198, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Neighboring gene branched-chain amino acid transaminase 1 Neighboring gene branched-chain amino acid transaminase 2 Neighboring gene Protein prenylyltransferase superfamily protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100883.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Early-responsive to dehydration stress protein (ERD4)
    NP_172480.2
    • Early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: lipases;hydrolases, acting on ester bonds (TAIR:AT1G58520.1); Has 1417 Blast hits to 1261 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 180; Fungi - 691; Plants - 423; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3290311..3296198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100883.3 → NP_172480.2  Early-responsive to dehydration stress protein (ERD4) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172480.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80599, Q681Q0, Q8LC14, Q94A87
      UniProtKB/TrEMBL
      A0A097NUS5, A0A178W2H3, A0A654E9Y2
      Conserved Domains (2) summary
      COG5594
      Location:4 → 652
      COG5594; Uncharacterized integral membrane protein [Function unknown]
      pfam02714
      Location:352 → 616
      RSN1_7TM; Calcium-dependent channel, 7TM region, putative phosphate
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94A87.1

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