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    BET9 bromodomain and extraterminal domain protein 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831277, updated on 7-Sep-2023

    Summary

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    Gene symbol
    BET9
    Gene description
    bromodomain and extraterminal domain protein 9
    Primary source
    Araport:AT5G14270
    Locus tag
    AT5G14270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBET9; bromodomain and extraterminal domain protein 9; F18O22.60; F18O22_60
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (4604608..4608921)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Proteasome component (PCI) domain protein Neighboring gene Rubisco methyltransferase family protein Neighboring gene uncharacterized protein Neighboring gene DNA-binding storekeeper-like protein Neighboring gene DNA-binding storekeeper Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bromodomain proteins GTE9 and GTE11 are essential for specific BT2-mediated sugar and ABA responses in Arabidopsis thaliana. Misra A, et al. Plant Mol Biol, 2018 Mar. PMID 29363002
    2. A novel family of Ca2+/calmodulin-binding proteins involved in transcriptional regulation: interaction with fsh/Ring3 class transcription activators. Du L, et al. Plant Mol Biol, 2004 Mar. PMID 15316289
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Loss of either GTE9 or GTE11 in a BT2 over-expressing line blocked resistance to sugars and ABA, indicating that both GTE9 and GTE11 were required for BT2 function. [GTE9]
      Title: Bromodomain proteins GTE9 and GTE11 are essential for specific BT2-mediated sugar and ABA responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203379.1
    NM_001343329.1
    NM_121431.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to abscisic acid IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    bromodomain and extraterminal domain protein 9
    NP_001190308.1
    • bromodomain and extraterminal domain protein 9 (BET9); FUNCTIONS IN: DNA binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 10 (TAIR:AT3G01770.1).
    NP_568297.1
    • bromodomain and extraterminal domain protein 9 (BET9); FUNCTIONS IN: DNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 10 (TAIR:AT3G01770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4604608..4608921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121431.3 → NP_568297.1  bromodomain and extraterminal domain protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568297.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFD6, Q93YS6, Q9LYA2
      UniProtKB/TrEMBL
      A0A5S9Y4E2
      Conserved Domains (1) summary
      cd05506
      Location:137 → 235
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...

    2. NM_001203379.1 → NP_001190308.1  bromodomain and extraterminal domain protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190308.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y4E2, F4K6Q7
      Conserved Domains (1) summary
      cd05506
      Location:137 → 235
      Bromo_plant1; Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with ...

    3. NM_001343329.1 → NP_001332743.1  bromodomain and extraterminal domain protein 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B9DFD6, Q93YS6, Q9LYA2
      UniProtKB/TrEMBL
      A0A5S9Y4E2
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93YS6.1

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