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    AT5G14260 Rubisco methyltransferase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831276, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G14260
    Gene description
    Rubisco methyltransferase family protein
    Primary source
    Araport:AT5G14260
    Locus tag
    AT5G14260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F18O22.50; F18O22_50
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (4600904..4604482)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ankyrin Neighboring gene Thioredoxin superfamily protein Neighboring gene Proteasome component (PCI) domain protein Neighboring gene uncharacterized protein Neighboring gene bromodomain and extraterminal domain protein 9 Neighboring gene DNA-binding storekeeper-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
    2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343328.1
    NM_121430.4
    NM_180707.3
    NM_203049.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Rubisco methyltransferase family protein
    NP_196930.2
    • Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851038.1
    • Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 733 Blast hits to 728 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 170; Fungi - 133; Plants - 336; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
    NP_974778.1
    • Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      4600904..4604482
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121430.4 → NP_196930.2  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196930.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VY03, Q8VZB5
      Conserved Domains (1) summary
      pfam09273
      Location:369 → 483
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    2. NM_180707.3 → NP_851038.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851038.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VY03, Q8VZB5
      Conserved Domains (1) summary
      pfam09273
      Location:369 → 483
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    3. NM_203049.2 → NP_974778.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974778.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8VY03, Q8VZB5
      Conserved Domains (1) summary
      pfam09273
      Location:369 → 483
      Rubis-subs-bind; Rubisco LSMT substrate-binding

    4. NM_001343328.1 → NP_001331285.1  Rubisco methyltransferase family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDE0, Q8VY03
    Nucleotide Protein
    Heading Accession and Version

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