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    AT5G08630 DDT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830764, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT5G08630
    Gene description
    DDT domain-containing protein
    Primary source
    Araport:AT5G08630
    Locus tag
    AT5G08630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAH20.19; MAH20_19
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Sequence:
    Chromosome: 5; NC_003076.8 (2798010..2803205, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene flavonol synthase 1 Neighboring gene Small GTP-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. Tan LM, et al. Plant Cell, 2020 Jul. PMID 32358072, Free PMC Article
    2. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. Luo YX, et al. EMBO J, 2020 Apr 1. PMID 32115743, Free PMC Article
    3. Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis. Servet C, et al. Biochim Biophys Acta, 2008 Jun-Jul. PMID 18498779
    4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343025.1
    NM_120950.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ISWI-type complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DDT domain-containing protein
    NP_196480.2
    • DDT domain-containing protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), WSTF/Acf1/Cbp146 (InterPro:IPR013136); Has 7496 Blast hits to 4698 proteins in 418 species: Archae - 4; Bacteria - 337; Metazoa - 2683; Fungi - 719; Plants - 380; Viruses - 89; Other Eukaryotes - 3284 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2798010..2803205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343024.1 → NP_001332612.1  DDT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298 → 355
      DDT; DDT domain
      pfam10537
      Location:24 → 120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399 → 435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603 → 667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    2. NM_120950.5 → NP_196480.2  DDT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196480.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298 → 355
      DDT; DDT domain
      pfam10537
      Location:24 → 120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399 → 435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603 → 667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

    3. NM_001343025.1 → NP_001332611.1  DDT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULX5, A0A384LG90, A0A7G2F651, F4KB54
      Conserved Domains (4) summary
      pfam02791
      Location:298 → 355
      DDT; DDT domain
      pfam10537
      Location:24 → 120
      WAC_Acf1_DNA_bd; ATP-utilising chromatin assembly and remodelling N-terminal
      pfam15612
      Location:399 → 435
      WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
      pfam15613
      Location:603 → 667
      WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    Nucleotide Protein
    Heading Accession and Version

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