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    VPS26B vacuolar protein sorting 26B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828883, updated on 15-Oct-2023

    Summary

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    Gene symbol
    VPS26B
    Gene description
    vacuolar protein sorting 26B
    Primary source
    Araport:AT4G27690
    Locus tag
    AT4G27690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29A15.180; T29A15_180; vacuolar protein sorting 26B
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    Genomic context

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    See VPS26B in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (13823510..13826395)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene heat shock protein 21 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Rhodanese/Cell cycle control phosphatase superfamily protein Neighboring gene cytochrome P450, family 709, subfamily B, polypeptide 3 Neighboring gene Major facilitator superfamily protein Neighboring gene oligopeptide transporter 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Retromer contributes to immunity-associated cell death in Arabidopsis. Munch D, et al. Plant Cell, 2015 Feb. PMID 25681156, Free PMC Article
    2. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036655.1
    NM_118908.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in intracellular anatomical structure ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar protein sorting 26B
    NP_001031732.1
    • vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_194499.2
    • vacuolar protein sorting 26B (VPS26B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26A (TAIR:AT5G53530.1); Has 795 Blast hits to 794 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 406; Fungi - 146; Plants - 106; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13823510..13826395
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118908.5 → NP_194499.2  vacuolar protein sorting 26B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_194499.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L3V2, Q9T091
      UniProtKB/TrEMBL
      A0A178UZ41, A0A5S9XWF0
      Conserved Domains (1) summary
      pfam03643
      Location:8 → 283
      Vps26; Vacuolar protein sorting-associated protein 26

    2. NM_001036655.1 → NP_001031732.1  vacuolar protein sorting 26B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031732.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B9DHG4, F4JJR0
      Conserved Domains (1) summary
      pfam03643
      Location:1 → 255
      Vps26; Vacuolar protein sorting-associated protein 26
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9T091.2

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