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    VPS28-1 vacuolar protein sorting-associated protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828241, updated on 15-Oct-2023

    Summary

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    Gene symbol
    VPS28-1
    Gene description
    vacuolar protein sorting-associated protein-like protein
    Primary source
    Araport:AT4G21560
    Locus tag
    AT4G21560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F17L22.20; vacuolar protein sorting 28; vacuolar protein sorting-associated protein 28 homolog 1; VPS28
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (11468666..11470569, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene sphingosine kinase 1 Neighboring gene ncRNA Neighboring gene VP1/ABI3-like 3 Neighboring gene organic solute transporter ostalpha protein (DUF300) Neighboring gene oxidoreductase, zinc-binding dehydrogenase family protein Neighboring gene endonuclease 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Multivesicular bodies mature from the trans-Golgi network/early endosome in Arabidopsis. Scheuring D, et al. Plant Cell, 2011 Sep. PMID 21934143, Free PMC Article
    2. The Arabidopsis ESCRT protein-protein interaction network. Shahriari M, et al. Plant Mol Biol, 2011 May. PMID 21442383
    3. The Arabidopsis elch mutant reveals functions of an ESCRT component in cytokinesis. Spitzer C, et al. Development, 2006 Dec. PMID 17090720
    4. Protein-Protein Interaction Network and Subcellular Localization of the Arabidopsis Thaliana ESCRT Machinery. Richardson LG, et al. Front Plant Sci, 2011. PMID 22639582, Free PMC Article
    5. Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel. Ferrández-Ayela A, et al. PLoS One, 2013. PMID 23840761, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001341499.1
    NM_118276.4
    NM_202856.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endosome transport via multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ESCRT I complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein-like protein
    NP_001320024.1
    • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_193887.1
    • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 388 Blast hits to 387 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 146; Plants - 72; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
    NP_974585.1
    • vacuolar protein sorting-associated protein 28 homolog 1 (VPS28-1); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated, VPS28, N-terminal (InterPro:IPR017898), Vacuolar protein sorting-associated, VPS28, C-terminal (InterPro:IPR017899), Vacuolar protein sorting-associated, VPS28 (InterPro:IPR007143); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting-associated protein VPS28 family protein (TAIR:AT4G05000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      11468666..11470569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118276.4 → NP_193887.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193887.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65421
      UniProtKB/TrEMBL
      A0A178UVB3, A0A5S9XUI4
      Conserved Domains (1) summary
      pfam03997
      Location:18 → 204
      VPS28; VPS28 protein

    2. NM_202856.3 → NP_974585.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974585.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65421
      UniProtKB/TrEMBL
      A0A178UVB3, A0A5S9XUI4
      Conserved Domains (1) summary
      pfam03997
      Location:18 → 204
      VPS28; VPS28 protein

    3. NM_001341499.1 → NP_001320024.1  vacuolar protein sorting-associated protein-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65421
      UniProtKB/TrEMBL
      A0A178UVB3, A0A5S9XUI4
      Conserved Domains (1) summary
      pfam03997
      Location:18 → 204
      VPS28; VPS28 protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65421.1

    Gene LinkOut

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