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    SEC15B exocyst complex component sec15B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828060, updated on 7-Sep-2023

    Summary

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    Gene symbol
    SEC15B
    Gene description
    exocyst complex component sec15B
    Primary source
    Araport:AT4G02350
    Locus tag
    AT4G02350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    exocyst complex component sec15B; T14P8.16; T14P8_16
    Summary
    Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (1038114..1041064)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Plant invertase/pectin methylesterase inhibitor superfamily Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene transmembrane protein, putative (Protein of unknown function, DUF538) Neighboring gene pectinesterase (Protein of unknown function, DUF538)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microtubule-dependent targeting of the exocyst complex is necessary for xylem development in Arabidopsis. Vukašinović N, et al. New Phytol, 2017 Feb. PMID 27801942
    2. The role for the exocyst complex subunits Exo70B2 and Exo70H1 in the plant-pathogen interaction. Pecenková T, et al. J Exp Bot, 2011 Mar. PMID 21199889, Free PMC Article
    3. Exo70E2 is essential for exocyst subunit recruitment and EXPO formation in both plants and animals. Ding Y, et al. Mol Biol Cell, 2014 Feb. PMID 24307681, Free PMC Article
    4. An exocyst complex functions in plant cell growth in Arabidopsis and tobacco. Hála M, et al. Plant Cell, 2008 May. PMID 18492870, Free PMC Article
    5. RNA Silencing of Exocyst Genes in the Stigma Impairs the Acceptance of Compatible Pollen in Arabidopsis. Safavian D, et al. Plant Physiol, 2015 Dec. PMID 26443677, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001340371.1
    NM_116468.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within acceptance of pollen IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen germination IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in vesicle tethering involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of exocyst IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular exosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    exocyst complex component sec15B
    NP_001319844.1
    • exocyst complex component sec15B (SEC15B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane, membrane, exocyst; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex subunit Sec15-like (InterPro:IPR007225); BEST Arabidopsis thaliana protein match is: exocyst complex component sec15A (TAIR:AT3G56640.1); Has 431 Blast hits to 427 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 138; Plants - 91; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      1038114..1041064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340371.1 → NP_001319844.1  exocyst complex component sec15B [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JHH5, O81298
      UniProtKB/TrEMBL
      A0A5S9XP70, A0A654FL64

    2. NM_116468.4 → NP_567229.2  exocyst complex component sec15B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567229.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JHH5, O81298
      UniProtKB/TrEMBL
      A0A5S9XP70, A0A654FL64
      Conserved Domains (2) summary
      pfam04091
      Location:447 → 751
      Sec15; Exocyst complex subunit Sec15-like
      cl22951
      Location:64 → 115
      Vps51; Vps51/Vps67
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4JHH5.1

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