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    AT3G52760 Integral membrane Yip1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824442, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G52760
    Gene description
    Integral membrane Yip1 family protein
    Primary source
    Araport:AT3G52760
    Locus tag
    AT3G52760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (19553679..19554858, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tubulin/FtsZ family protein Neighboring gene tRNA-Asp Neighboring gene binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_115136.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Integral membrane Yip1 family protein
    NP_190844.1
    • Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G36300.1); Has 535 Blast hits to 535 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 117; Plants - 63; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19553679..19554858 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115136.4 → NP_190844.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190844.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VCK2, A0A384KLB3, A0A5S9XKZ3, Q9LXI9
      Conserved Domains (1) summary
      cl21557
      Location:61 → 257
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version

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