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    SDR4 NAD(P)-binding Rossmann-fold superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822580, updated on 27-Sep-2019

    Summary

    Gene symbol
    SDR4
    Gene description
    NAD(P)-binding Rossmann-fold superfamily protein
    Primary source
    Araport:AT3G29250
    Locus tag
    AT3G29250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSDR4; short-chain dehydrogenase reductase 4

    Genomic context

    See SDR4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (11193389..11195171, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene PPR containing protein (DUF179) Neighboring gene miscRNA Neighboring gene Putative pentacyclic triterpene synthase 7

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001125265.2
    NM_113849.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    copper ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm ISM
    Inferred from Sequence Model
    more info
     
    extracellular region ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    NAD(P)-binding Rossmann-fold superfamily protein
    NP_001118737.1
    • NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G29260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_189570.3
    • NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G29260.1); Has 117310 Blast hits to 117106 proteins in 3562 species: Archae - 953; Bacteria - 77625; Metazoa - 4727; Fungi - 6379; Plants - 2526; Viruses - 6; Other Eukaryotes - 25094 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      11193389..11195171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339015.1NP_001326150.1  NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2Z7
    2. NM_113849.3NP_189570.3  NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189570.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2Z7
      Conserved Domains (2) summary
      PLN02253
      Location:42293
      PLN02253; xanthoxin dehydrogenase
      cl21454
      Location:44291
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    3. NM_001125265.2NP_001118737.1  NAD(P)-binding Rossmann-fold superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118737.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4J2Z7
      Conserved Domains (2) summary
      PLN02253
      Location:1255
      PLN02253; xanthoxin dehydrogenase
      cl21454
      Location:5253
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
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