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    AT3G28715 ATPase, V0/A0 complex, subunit C/D [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822503, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G28715
    Gene description
    ATPase, V0/A0 complex, subunit C/D
    Primary source
    Araport:AT3G28715
    Locus tag
    AT3G28715
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (10777837..10780664)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene ATPase, V0/A0 complex, subunit C/D Neighboring gene uncharacterized protein Neighboring gene high mobility group Neighboring gene Cytochrome P450 superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis V-ATPase d2 Subunit Plays a Role in Plant Responses to Oxidative Stress. Feng S, et al. Genes (Basel), 2020 Jun 25. PMID 32630497, Free PMC Article
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203067.1
    NM_113792.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in plasmodesma HDA PubMed 
    part_of proton-transporting V-type ATPase, V0 domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole HDA PubMed 
    located_in vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase, V0/A0 complex, subunit C/D
    NP_001189996.1
    • ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1).
    NP_189513.1
    • ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1); Has 636 Blast hits to 635 proteins in 308 species: Archae - 22; Bacteria - 2; Metazoa - 293; Fungi - 152; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10777837..10780664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203067.1 → NP_001189996.1  ATPase, V0/A0 complex, subunit C/D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189996.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4J0D8, Q9FE04
      Conserved Domains (2) summary
      COG1527
      Location:14 → 332
      NtpC; Archaeal/vacuolar-type H+-ATPase subunit C/Vma6 [Energy production and conversion]
      pfam01992
      Location:16 → 335
      vATP-synt_AC39; ATP synthase (C/AC39) subunit

    2. NM_113792.3 → NP_189513.1  ATPase, V0/A0 complex, subunit C/D [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189513.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LHA4
      UniProtKB/TrEMBL
      A0A178VAM3, A0A5S9XGM4, Q9FE04
      Conserved Domains (1) summary
      pfam01992
      Location:16 → 343
      vATP-synt_AC39; ATP synthase (C/AC39) subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LHA4.1

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