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    HEB2 condensin-2 complex subunit H2-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820925, updated on 7-Sep-2023

    Summary

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    Gene symbol
    HEB2
    Gene description
    condensin-2 complex subunit H2-like protein
    Primary source
    Araport:AT3G16730
    Locus tag
    AT3G16730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    hypersensitive to excess boron 2
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    Genomic context

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    See HEB2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Sequence:
    Chromosome: 3; NC_003074.8 (5695321..5699167, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene TOXICOS EN LEVADURA 2 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Condensin II alleviates DNA damage and is essential for tolerance of boron overload stress in Arabidopsis. Sakamoto T, et al. Plant Cell, 2011 Sep. PMID 21917552, Free PMC Article
    2. Characterization and dynamic analysis of Arabidopsis condensin subunits, AtCAP-H and AtCAP-H2. Fujimoto S, et al. Planta, 2005 Oct. PMID 15883832
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    NM_112546.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in DNA damage response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in condensed chromosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    condensin-2 complex subunit H2-like protein
    NP_188295.2
    • CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5695321..5699167 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112546.4 → NP_188295.2  condensin-2 complex subunit H2-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188295.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LUR0
      UniProtKB/TrEMBL
      A0A5S9XCT8, A0A654F7W9
      Conserved Domains (3) summary
      pfam06278
      Location:17 → 129
      CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
      pfam16858
      Location:303 → 590
      CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
      pfam16869
      Location:153 → 279
      CNDH2_M; PF16858
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LUR0.1

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