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    AT3G13700 RNA-binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820579, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT3G13700
    Gene description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Primary source
    Araport:AT3G13700
    Locus tag
    AT3G13700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See AT3G13700 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (4490628..4493737, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene LSD1-like2 Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene prenylated RAB acceptor 1.F4 Neighboring gene PRA1 (Prenylated rab acceptor) family protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 90, subfamily D, polypeptide 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001125150.1
    NM_112220.2

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein
    NP_001118622.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_187983.1
    • RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G42240.2); Has 727 Blast hits to 705 proteins in 179 species: Archae - 2; Bacteria - 0; Metazoa - 299; Fungi - 191; Plants - 191; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4490628..4493737 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125150.1 → NP_001118622.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118622.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAU9, A0A654F6U6, Q8GYT5
      Conserved Domains (3) summary
      COG0724
      Location:105 → 264
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12245
      Location:203 → 281
      RRM_scw1_like; RNA recognition motif (RRM) found in yeast cell wall integrity protein scw1 and similar proteins
      cl17169
      Location:38 → 112
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_112220.2 → NP_187983.1  RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187983.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VAU9, B3H4P0
      Conserved Domains (3) summary
      COG0724
      Location:37 → 166
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12245
      Location:221 → 296
      RRM_scw1_like; RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins
      cd12420
      Location:37 → 130
      RRM_RBPMS_like; RNA recognition motif in RNA-binding protein with multiple splicing (RBP-MS)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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