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    FPA RNA binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818942, updated on 10-Oct-2019

    Summary

    Gene symbol
    FPA
    Gene description
    RNA binding protein
    Primary source
    Araport:AT2G43410
    Locus tag
    AT2G43410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1O24.15
    Summary
    FPA is a gene that regulates flowering time in Arabidopsis via a pathway that is independent of daylength (the autonomous pathway). Mutations in FPA result in extremely delayed flowering. Double mutants with FCA have reduced fertility and single/double mutants have defects in siRNA mediated chromatin silencing.

    Genomic context

    See FPA in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (18025247..18031255, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein Neighboring gene hypothetical protein Neighboring gene electron-transfer flavoprotein:ubiquinone oxidoreductase Neighboring gene ncRNA Neighboring gene 3-beta hydroxysteroid dehydrogenase/isomerase family protein Neighboring gene glyoxalase 2-1

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001084577.2
    NM_001084578.1
    NM_001084579.2
    NM_001337027.1
    NM_001337028.1
    NM_129902.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    chromatin silencing by small RNA IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryo development ending in seed dormancy IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    embryo sac development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    flower development IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA polyadenylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of flower development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    chromatin IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    RNA binding protein
    NP_001078046.1
    • FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 504799 Blast hits to 501692 proteins in 22138 species: Archae - 10949; Bacteria - 306025; Metazoa - 96089; Fungi - 13914; Plants - 29775; Viruses - 36050; Other Eukaryotes - 11997 (source: NCBI BLink).
    NP_001078047.1
    • FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 504799 Blast hits to 501692 proteins in 22138 species: Archae - 10949; Bacteria - 306025; Metazoa - 96089; Fungi - 13914; Plants - 29775; Viruses - 36050; Other Eukaryotes - 11997 (source: NCBI BLink).
    NP_001078048.1
    • FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 504799 Blast hits to 501692 proteins in 22138 species: Archae - 10949; Bacteria - 306025; Metazoa - 96089; Fungi - 13914; Plants - 29775; Viruses - 36050; Other Eukaryotes - 11997 (source: NCBI BLink).
    NP_181869.2
    • FPA; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT4G12640.1); Has 18609 Blast hits to 15572 proteins in 650 species: Archae - 12; Bacteria - 876; Metazoa - 10127; Fungi - 2512; Plants - 3298; Viruses - 9; Other Eukaryotes - 1775 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18025247..18031255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129902.3NP_181869.2  RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181869.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPQ9
      Conserved Domains (3) summary
      cd12310
      Location:2089
      RRM3_Spen; RNA recognition motif 3 in the Spen (split end) protein family
      pfam07744
      Location:398494
      SPOC; SPOC domain
      pfam14179
      Location:718787
      YppG; YppG-like protein
    2. NM_001084577.2NP_001078046.1  RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078046.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPQ9
      Conserved Domains (3) summary
      cd12310
      Location:2089
      RRM3_Spen; RNA recognition motif 3 in the Spen (split end) protein family
      pfam07744
      Location:441537
      SPOC; SPOC domain
      pfam14179
      Location:761830
      YppG; YppG-like protein
    3. NM_001084579.2NP_001078048.1  RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078048.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPQ9
      Conserved Domains (3) summary
      cd12310
      Location:2089
      RRM3_Spen; RNA recognition motif 3 in the Spen (split end) protein family
      pfam07744
      Location:441537
      SPOC; SPOC domain
      pfam14179
      Location:761830
      YppG; YppG-like protein
    4. NM_001084578.1NP_001078047.1  RNA binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078047.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPQ9
      Conserved Domains (3) summary
      cd12310
      Location:2089
      RRM3_Spen; RNA recognition motif 3 in the Spen (split end) protein family
      pfam07744
      Location:441537
      SPOC; SPOC domain
      pfam14179
      Location:761830
      YppG; YppG-like protein
    5. NM_001337027.1NP_001323584.1  RNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXG2
    6. NM_001337028.1NP_001323585.1  RNA binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPQ9
      Conserved Domains (3) summary
      cd12310
      Location:2089
      RRM3_Spen; RNA recognition motif 3 in the Spen (split end) protein family
      pfam07744
      Location:398494
      SPOC; SPOC domain
      pfam14179
      Location:718787
      YppG; YppG-like protein
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