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    AT2G42330 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818834, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT2G42330
    Gene description
    GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
    Primary source
    Araport:AT2G42330
    Locus tag
    AT2G42330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MHK10.5; MHK10_5
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (17630729..17634370, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) protein Neighboring gene ncRNA Neighboring gene nucleolar protein gar2-like protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084572.3
    NM_001336968.1
    NM_129795.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein
    NP_001078041.1
    • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink).
    NP_181762.1
    • GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain; FUNCTIONS IN: nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tuftelin interacting protein N-terminal (InterPro:IPR022159), D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 1086 Blast hits to 1065 proteins in 234 species: Archae - 0; Bacteria - 5; Metazoa - 675; Fungi - 134; Plants - 155; Viruses - 1; Other Eukaryotes - 116 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17630729..17634370 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129795.4 → NP_181762.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181762.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLC6
      UniProtKB/TrEMBL
      A0A178VSI9, A0A7G2EFL9
      Conserved Domains (3) summary
      pfam01585
      Location:103 → 146
      G-patch; G-patch domain
      pfam07842
      Location:323 → 587
      GCFC; GC-rich sequence DNA-binding factor-like protein
      pfam12457
      Location:5 → 52
      TIP_N; Tuftelin interacting protein N terminal

    2. NM_001084572.3 → NP_001078041.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078041.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLC6
      UniProtKB/TrEMBL
      A0A178VSI9, A0A7G2EFL9
      Conserved Domains (3) summary
      pfam01585
      Location:103 → 146
      G-patch; G-patch domain
      pfam07842
      Location:323 → 587
      GCFC; GC-rich sequence DNA-binding factor-like protein
      pfam12457
      Location:5 → 52
      TIP_N; Tuftelin interacting protein N terminal

    3. NM_001336968.1 → NP_001325005.1  GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SLC6
      UniProtKB/TrEMBL
      A0A178VSI9, A0A7G2EFL9
      Conserved Domains (3) summary
      pfam01585
      Location:103 → 146
      G-patch; G-patch domain
      pfam07842
      Location:323 → 587
      GCFC; GC-rich sequence DNA-binding factor-like protein
      pfam12457
      Location:5 → 52
      TIP_N; Tuftelin interacting protein N terminal
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SLC6.1

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