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    sp5b Sp5 transcription factor b [ Danio rerio (zebrafish) ]

    Gene ID: 799504, updated on 27-Mar-2024

    Summary

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    Official Symbol
    sp5bprovided by ZNC
    Official Full Name
    Sp5 transcription factor bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131231-1
    See related
    Ensembl:ENSDARG00000005846 AllianceGenome:ZFIN:ZDB-GENE-131231-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human SP5 (Sp5 transcription factor). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (3809953..3813181)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (3649176..3652361)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene phosphatase, orphan 2 Neighboring gene small RNA binding exonuclease protection factor La Neighboring gene glutamate-rich 2 Neighboring gene glutamate decarboxylase 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    transcription factor Sp5-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      3809953..3813181
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172090.4 → XP_005172147.1  transcription factor Sp5-like

      UniProtKB/TrEMBL
      A0A8M2BJD7, F1Q751
      Related
      ENSDARP00000153701.1, ENSDART00000185105.1
      Conserved Domains (3) summary
      sd00017
      Location:193 → 212
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:248 → 270
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:234 → 257
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases