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    si:dkey-5n7.2 si:dkey-5n7.2 [ Danio rerio (zebrafish) ]

    Gene ID: 796802, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-5n7.2provided by ZNC
    Official Full Name
    si:dkey-5n7.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050420-254
    See related
    Ensembl:ENSDARG00000102339 AllianceGenome:ZFIN:ZDB-GENE-050420-254
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See si:dkey-5n7.2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (13087533..13088903)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (12400997..12402103)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene protocadherin 10a Neighboring gene si:dkeyp-7b3.2 Neighboring gene protocadherin 18a Neighboring gene uncharacterized LOC101886760

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:dkeyp-106c3.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      13087533..13088903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005159307.3 → XP_005159364.1  uncharacterized protein si:dkeyp-106c3.2

      UniProtKB/TrEMBL
      A0A0R4IPS8, A0A8M2B6A2
      Related
      ENSDARP00000135987.1, ENSDART00000170314.2
      Conserved Domains (1) summary
      pfam02892
      Location:20 → 59
      zf-BED; BED zinc finger
    Nucleotide Protein Strain
    Heading Accession and Version

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