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    zgc:153499 zgc:153499 [ Danio rerio (zebrafish) ]

    Gene ID: 791752, updated on 27-Mar-2024

    Summary

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    Official Symbol
    zgc:153499provided by ZNC
    Official Full Name
    zgc:153499provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060825-234
    See related
    Ensembl:ENSDARG00000070166 AllianceGenome:ZFIN:ZDB-GENE-060825-234
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi41b10; wu:fi41b10
    Summary
    Predicted to enable carbohydrate binding activity. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (8407898..8412072)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (8429654..8433744)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:ch1073-75o15.3 Neighboring gene zgc:171776 Neighboring gene insulin receptor substrate 2b Neighboring gene collagen, type IV, alpha 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC153499

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC791752

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045426.2 → NP_001038891.2  uncharacterized protein LOC791752 precursor

      Status: VALIDATED

      Source sequence(s)
      CU469523
      UniProtKB/TrEMBL
      A0A8M1NAZ6, F1R3C9
      Related
      ENSDARP00000116226.1, ENSDART00000144373.2
      Conserved Domains (1) summary
      pfam02140
      Location:139 → 218
      Gal_Lectin; Galactose binding lectin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      8407898..8412072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478773.1 → XP_021334448.1  uncharacterized protein LOC791752 isoform X1

      UniProtKB/TrEMBL
      A0A286Y8S5, A0A8M9Q4Q8, F1R0Y8
      Related
      ENSDARP00000093530.5, ENSDART00000102754.5
      Conserved Domains (1) summary
      pfam02140
      Location:140 → 219
      Gal_Lectin; Galactose binding lectin domain

    2. XM_021478774.1 → XP_021334449.1  uncharacterized protein LOC791752 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QAY8
      Conserved Domains (1) summary
      pfam02140
      Location:140 → 186
      Gal_Lectin; Galactose binding lectin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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