zgc:158423 zgc:158423 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:158423provided by ZNC
Official Full Name: zgc:158423provided by ZNC
Primary source: ZFIN:ZDB-GENE-061215-58
See related: Ensembl:ENSDARG00000055791 AllianceGenome:ZFIN:ZDB-GENE-061215-58
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable catalytic activity. Predicted to act upstream of or within amino acid transport and carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (20535866..20542545)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (20283898..20290577)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables L-alanine transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables L-leucine transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables aromatic amino acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in L-alanine import across plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
involved_in L-leucine import across plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within amino acid transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info
involved_in phenylalanine transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in apical plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in basolateral plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC790938

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001080083.1 → NP_001073552.1 uncharacterized protein LOC790938

See identical proteins and their annotated locations for NP_001073552.1

Status: PREDICTED

Source sequence(s)

BC128865

UniProtKB/TrEMBL

A1A5Y9

Related

ENSDARP00000072643.5, ENSDART00000078181.6

Conserved Domains (3) summary

COG0366
Location:99 → 446

AmyA; Glycosidase [Carbohydrate transport and metabolism]

pfam16028
Location:29 → 98

SLC3A2_N; Solute carrier family 3 member 2 N-terminus

cl07893
Location:81 → 391

AmyAc_family; Alpha amylase catalytic domain family