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    crmp1 collapsin response mediator protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779767, updated on 5-Mar-2024

    Summary

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    Official Symbol
    crmp1provided by Xenbase
    Official Full Name
    collapsin response mediator protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-992563
    See related
    Ensembl:ENSXETG00000011600
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (25637159..25664050)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (19258351..19284671, complement)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene Wolfram syndrome 1 (wolframin) Neighboring gene uncharacterized LOC116408438 Neighboring gene janus kinase and microtubule interacting protein 1 Neighboring gene EvC ciliary complex subunit 1 Neighboring gene Ellis van Creveld syndrome 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC145930

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dihydropyrimidinase-related protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078846.1 → NP_001072314.1  dihydropyrimidinase-related protein 1

      See identical proteins and their annotated locations for NP_001072314.1

      Status: PROVISIONAL

      Source sequence(s)
      BC121372
      UniProtKB/TrEMBL
      A0A6I8RTH2, Q0V9W2
      Related
      ENSXETP00000084557.1, ENSXETT00000087925.2
      Conserved Domains (1) summary
      cd01314
      Location:125 → 574
      D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      25637159..25664050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012965113.3 → XP_012820567.1  dihydropyrimidinase-related protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A6I8RTH2, A0A8J0SRL5
      Conserved Domains (2) summary
      PRK09060
      Location:109 → 565
      PRK09060; dihydroorotase; Validated
      cd01314
      Location:109 → 558
      D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...

    2. XM_012965116.3 → XP_012820570.1  dihydropyrimidinase-related protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0SNS0, L7N3A4
      Related
      ENSXETP00000025359.3, ENSXETT00000025359.3
      Conserved Domains (1) summary
      cd01314
      Location:17 → 466
      D-HYD; D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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