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    XB5947741 novel protein similar to pqlc2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733474, updated on 25-Jan-2024

    Summary

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    Symbol
    XB5947741provided by Xenbase
    Full Name
    novel protein similar to pqlc2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5947742
    See related
    Ensembl:ENSXETG00000028096
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (130049980..130066282, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683515.1 (222733..226522, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene provisional ortholog of solute carrier family 66 member 1 Neighboring gene MGC69309 protein Neighboring gene U7 small nuclear RNA Neighboring gene U7 small nuclear RNA Neighboring gene aldo-keto reductase family 7, member A2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    novel protein similar to pqlc2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044421.1 → NP_001037886.1  novel protein similar to pqlc2

      See identical proteins and their annotated locations for NP_001037886.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760153
      UniProtKB/TrEMBL
      A0A803KBJ0, Q28IY9
      Related
      ENSXETP00000106997.1, ENSXETT00000109728.1
      Conserved Domains (1) summary
      pfam04193
      Location:187 → 242
      PQ-loop; PQ loop repeat

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      130049980..130066282 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031905125.1 → XP_031760985.1  novel protein similar to pqlc2 isoform X1

      UniProtKB/TrEMBL
      A0A803KBJ0, Q28IY9
      Related
      ENSXETP00000109330.1, ENSXETT00000107805.1
      Conserved Domains (1) summary
      pfam04193
      Location:187 → 242
      PQ-loop; PQ loop repeat
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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