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    LOC6640653 spondin-1 [ Drosophila willistoni ]

    Gene ID: 6640653, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC6640653
    Gene description
    spondin-1
    Locus tag
    Dwil_GK21893
    See related
    EnsemblRapid:LOC6640653
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila willistoni
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GK21893; GK21893-PA
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    Genomic context

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    See LOC6640653 in Genome Data Viewer
    Location:
    chromosome: 2L
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current UCI_dwil_1.1 (GCF_018902025.1) 2L Unlocalized Scaffold NW_025814048.1 (4584339..4588775, complement)
    101 previous assembly dwil_caf1 (GCF_000005925.1) Unplaced Scaffold NW_002032470.1 (4719549..4723985)

    NW_025814048.1Genomic Context describing neighboring genes Neighboring gene spondin-1 Neighboring gene spondin-1 Neighboring gene nuclear matrix constituent protein 1a Neighboring gene sodium-dependent nutrient amino acid transporter 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    spondin-1
    Names
    Dwil\GK21893
    Dwil\GK21893-PA
    dwil_GLEANR_4990

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila willistoni Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_dwil_1.1

    Genomic

    1. NW_025814048.1 Reference UCI_dwil_1.1

      Range
      4584339..4588775 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023174887.1 → XP_023030655.1  spondin-1

      UniProtKB/TrEMBL
      B4MQK7
      Related
      XP_023030655.1, XM_023174887.1
      Conserved Domains (5) summary
      smart00209
      Location:417 → 466
      TSP1; Thrombospondin type 1 repeats
      cd08544
      Location:28 → 168
      Reeler; the N-terminal domain of reelin, F-spondin, and a variety of other proteins
      cl00101
      Location:670 → 723
      KU; BPTI/Kunitz family of serine protease inhibitors; Structure is a disulfide rich alpha+beta fold. BPTI (bovine pancreatic trypsin inhibitor) is an extensively studied model structure.
      pfam00090
      Location:826 → 873
      TSP_1; Thrombospondin type 1 domain
      pfam06468
      Location:191 → 378
      Spond_N; Spondin_N
    Nucleotide Protein
    Heading Accession and Version

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