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    LOC6499459 structure-specific endonuclease subunit SLX1 homolog [ Drosophila ananassae ]

    Gene ID: 6499459, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC6499459
    Gene description
    structure-specific endonuclease subunit SLX1 homolog
    Locus tag
    Dana_GF16665
    See related
    EnsemblRapid:LOC6499459
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila ananassae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    slx1; GF16665; GF16665-PA
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    Genomic context

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    Location:
    chromosome: 2L
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current ASM1763931v2 (GCF_017639315.1) 2L NC_057927.1 (13368260..13370716, complement)
    101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473262.1 (13393800..13396284, complement)

    Chromosome 2L - NC_057927.1Genomic Context describing neighboring genes Neighboring gene vicilin-like seed storage protein At2g18540 Neighboring gene autophagy-related protein 13 homolog Neighboring gene uncharacterized LOC6501126 Neighboring gene mediator of RNA polymerase II transcription subunit 31 Neighboring gene serine/arginine repetitive matrix protein 2 Neighboring gene 5-hydroxytryptamine receptor 2B Neighboring gene uncharacterized LOC6499455

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-flap endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables crossover junction DNA endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Slx1-Slx4 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structure-specific endonuclease subunit SLX1 homolog
    Names
    Dana\GF16665
    Dana\GF16665-PA
    dana_GLEANR_17931

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1763931v2

    Genomic

    1. NC_057927.1 Reference ASM1763931v2

      Range
      13368260..13370716 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001954562.4 → XP_001954598.2  structure-specific endonuclease subunit SLX1 homolog

      UniProtKB/Swiss-Prot
      B3M0F3
      Related
      XP_001954598.2, XM_001954562.4
      Conserved Domains (2) summary
      cd10455
      Location:21 → 99
      GIY-YIG_SLX1; Catalytic GIY-YIG domain of yeast structure-specific endonuclease subunit SLX1 and its eukaryotic homologs
      cl17238
      Location:193 → 252
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B3M0F3.1 GenPept UniProtKB/Swiss-Prot:B3M0F3

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