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    dctn4 dynactin subunit 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 595065, updated on 5-Mar-2024

    Summary

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    Official Symbol
    dctn4provided by Xenbase
    Official Full Name
    dynactin subunit 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-491837
    See related
    Ensembl:ENSXETG00000015820
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (21854860..21873709, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (5753920..5772761)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene synaptopodin Neighboring gene myozenin 3 Neighboring gene small integral membrane protein 3 Neighboring gene neuron-derived neurotrophic factor like 1, gene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC97564

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of dynactin complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in sarcomere IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in stress fiber IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    dynactin subunit 4
    Names
    dynactin 4 (p62)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030502.1 → NP_001025673.1  dynactin subunit 4

      See identical proteins and their annotated locations for NP_001025673.1

      Status: PROVISIONAL

      Source sequence(s)
      BC093456
      UniProtKB/TrEMBL
      A0A803KK10, F6YDA7, F6ZJC2, Q561P4
      Related
      ENSXETP00000034490.5, ENSXETT00000034490.5
      Conserved Domains (1) summary
      pfam05502
      Location:23 → 339
      Dynactin_p62; Dynactin p62 family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      21854860..21873709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012959132.3 → XP_012814586.1  dynactin subunit 4 isoform X1

      UniProtKB/TrEMBL
      A0A803KK10, A0A8J0SIN5
      Conserved Domains (1) summary
      pfam05502
      Location:23 → 332
      Dynactin_p62; Dynactin p62 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.