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    snoRNA:Psi28S-2949 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 5740401, updated on 29-Dec-2023

    Summary

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    Official Symbol
    snoRNA:Psi28S-2949provided by FlyBase
    Primary source
    FLYBASE:FBgn0082981
    Locus tag
    Dmel_CR34525
    See related
    AllianceGenome:FB:FBgn0082981
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR34525; Dmel\CR34525; Psi 28S-2949; psi28S-2949; Psi28S-2949
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    Genomic context

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    Location:
    45A2-45A2; 2-60 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (9095372..9095526)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (4982877..4983031)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene DEAD box protein 45A Neighboring gene NAD kinase 2, mitochondrial Neighboring gene Bootlegger Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U snoRNA host gene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pleiotropic fitness effects of the lncRNA Uhg4 in Drosophila melanogaster. MacPherson RA, et al. BMC Genomics, 2022 Nov 30. PMID 36451091, Free PMC Article
    2. snoRNAs are a novel class of biologically relevant Myc targets. Herter EK, et al. BMC Biol, 2015 Apr 16. PMID 25888729, Free PMC Article
    3. Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs. Huang ZP, et al. RNA, 2005 Aug. PMID 15987805, Free PMC Article
    4. Expression-Based Cell Lineage Analysis in Drosophila Through a Course-Based Research Experience for Early Undergraduates. Olson JM, et al. G3 (Bethesda), 2019 Nov 5. PMID 31690598, Free PMC Article
    5. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    • snoRNA:Psi28S-2949-RA; Dmel\snoRNA:Psi28S-2949-RA; CR34525-RA; Dmel\CR34525-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      9095372..9095526
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_003786.1 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases