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    dnajc30b DnaJ (Hsp40) homolog, subfamily C, member 30b [ Danio rerio (zebrafish) ]

    Gene ID: 565734, updated on 27-Mar-2024

    Summary

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    Official Symbol
    dnajc30bprovided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 30bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-532
    See related
    Ensembl:ENSDARG00000079415 AllianceGenome:ZFIN:ZDB-GENE-131121-532
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-235m3.11
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Williams-Beuren syndrome and nuclear type mitochondrial complex I deficiency. Orthologous to human DNAJC30 (DnaJ heat shock protein family (Hsp40) member C30). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (2590379..2596127, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (2626807..2632551, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene cut-like homeobox 1b Neighboring gene SH2B adaptor protein 2 Neighboring gene claudin j Neighboring gene claudin e

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DnaJ (Hsp40) homolog, subfamily C, member 30b; dnaJ (Hsp40) homolog, subfamily C, member 30b
    Names
    dnaJ homolog subfamily C member 30-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001326394.1 → NP_001313323.1  DnaJ (Hsp40) homolog, subfamily C, member 30b

      Status: VALIDATED

      Source sequence(s)
      CR382327
      UniProtKB/TrEMBL
      A0A8M1P398, E7F8P1
      Related
      ENSDARP00000103392.2, ENSDART00000114923.4
      Conserved Domains (1) summary
      pfam00226
      Location:112 → 172
      DnaJ; DnaJ domain

    RNA

    1. NR_136944.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CR382327

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      2590379..2596127 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021481444.1 → XP_021337119.1  dnaJ (Hsp40) homolog, subfamily C, member 30b isoform X1

      UniProtKB/TrEMBL
      A0A8M9QHB5
      Conserved Domains (1) summary
      pfam00226
      Location:104 → 164
      DnaJ; DnaJ domain

    2. XM_009291418.3 → XP_009289693.1  dnaJ (Hsp40) homolog, subfamily C, member 30b isoform X2

      UniProtKB/TrEMBL
      A0A8M3AI79
      Conserved Domains (1) summary
      pfam00226
      Location:112 → 172
      DnaJ; DnaJ domain
    Nucleotide Protein
    Heading Accession and Version

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