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    si:ch211-210c8.6 si:ch211-210c8.6 [ Danio rerio (zebrafish) ]

    Gene ID: 564023, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:ch211-210c8.6provided by ZNC
    Official Full Name
    si:ch211-210c8.6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3630
    See related
    Ensembl:ENSDARG00000017811 AllianceGenome:ZFIN:ZDB-GENE-030131-3630
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc47e12; wu:fc47e12
    Summary
    Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 23
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (33752215..33757687)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (33825486..33831138)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene si:ch211-210c8.7 Neighboring gene DAZ associated protein 2 Neighboring gene bridging integrator 2a Neighboring gene Rac GTPase activating protein 1 Neighboring gene inactive dipeptidyl peptidase 10-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. Hinaux H, et al. PLoS One, 2013. PMID 23326453, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the CH-CH group of donors IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:ch211-210c8.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      33752215..33757687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021470018.1 → XP_021325693.1  uncharacterized protein si:ch211-210c8.6

      UniProtKB/TrEMBL
      A0A8M9PFL7
      Related
      ENSDARP00000014473.9, ENSDART00000007260.11
      Conserved Domains (1) summary
      cl21511
      Location:37 → 265
      PEMT; Phospholipid methyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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