limd2 LIM domain containing 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: limd2provided by ZNC
Official Full Name: LIM domain containing 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-120906-1
See related: Ensembl:ENSDARG00000078092 AllianceGenome:ZFIN:ZDB-GENE-120906-1
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable metal ion binding activity. Orthologous to human LIMD2 (LIM domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (31848138..31875138, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (31717446..31743424, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables actin filament binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in actin filament bundle assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in actin cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: LIM domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001328061.1 → NP_001314990.1 LIM domain-containing protein 2

Status: VALIDATED

Source sequence(s)

BX324157

UniProtKB/TrEMBL

A0A8M1P3H5, X1WG15

Related

ENSDARP00000129170.1, ENSDART00000155298.2

Conserved Domains (1) summary

cd09486
Location:27 → 79

LIM_Eplin_like_1; a LIM domain subfamily on a group of proteins with unknown function

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

31848138..31875138 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009299559.3 → XP_009297834.1 LIM domain-containing protein 2 isoform X1

UniProtKB/TrEMBL

A0A8M3AQP1

Conserved Domains (1) summary

cd09486
Location:44 → 96

LIM_Eplin_like_1; a LIM domain subfamily on a group of proteins with unknown function