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    si:dkey-21e2.10 si:dkey-21e2.10 [ Danio rerio (zebrafish) ]

    Gene ID: 556860, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-21e2.10provided by ZNC
    Official Full Name
    si:dkey-21e2.10provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-778
    See related
    Ensembl:ENSDARG00000095005 AllianceGenome:ZFIN:ZDB-GENE-050208-778
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: 22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (19247227..19250736)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (19222274..19225758)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene si:dkey-21e2.7 Neighboring gene si:dkey-21e2.8 Neighboring gene si:dkey-21e2.13 Neighboring gene si:dkey-21e2.14

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables serine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    duodenase-1; uncharacterized protein LOC556860

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      19247227..19250736
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296345.2 → XP_009294620.1  duodenase-1

      UniProtKB/TrEMBL
      A0A8M9Q7D5
      Related
      ENSDARP00000113285.1, ENSDART00000144053.2
      Conserved Domains (1) summary
      smart00020
      Location:27 → 242
      Tryp_SPc; Trypsin-like serine protease

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395101.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      147056..150565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473470.1 → XP_021329145.1  duodenase-1

      UniProtKB/TrEMBL
      A0A8M9Q7D5
      Conserved Domains (1) summary
      smart00020
      Location:27 → 242
      Tryp_SPc; Trypsin-like serine protease

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395351.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      149961..153470
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021474472.1 → XP_021330147.1  duodenase-1

      UniProtKB/TrEMBL
      A0A8M9Q7D5
      Conserved Domains (1) summary
      smart00020
      Location:27 → 242
      Tryp_SPc; Trypsin-like serine protease
    Nucleotide Protein
    Heading Accession and Version

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