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    zgc:110372 zgc:110372 [ Danio rerio (zebrafish) ]

    Gene ID: 550472, updated on 3-Oct-2019

    Summary

    Official Symbol
    zgc:110372provided by ZNC
    Official Full Name
    zgc:110372provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-297
    See related
    Ensembl:ENSDARG00000022176
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Orthologs

    Genomic context

    See zgc:110372 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (50434317..50824469)
    105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (50489746..50960056)
    103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (53963722..53964131) , (54265550..54348882)

    Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene upstream transcription factor 2, c-fos interacting-like Neighboring gene hepcidin antimicrobial peptide Neighboring gene uncharacterized LOC110438006 Neighboring gene si:ch73-90p23.1 Neighboring gene free fatty acid receptor 3-like

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017775.2NP_001017775.2  igLON family member 5 precursor

      See identical proteins and their annotated locations for NP_001017775.2

      Status: PROVISIONAL

      Source sequence(s)
      CU458930
      UniProtKB/TrEMBL
      A4JYK9
      Related
      ENSDARP00000154118.1, ENSDART00000193500.1
      Conserved Domains (4) summary
      smart00410
      Location:217298
      IG_like; Immunoglobulin like
      pfam07679
      Location:128207
      I-set; Immunoglobulin I-set domain
      pfam00047
      Location:223296
      ig; Immunoglobulin domain
      cl11960
      Location:35123
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007127.7 Reference GRCz11 Primary Assembly

      Range
      50434317..50824469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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