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    fdps farnesyl diphosphate synthase [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548584, updated on 5-Mar-2024

    Summary

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    Official Symbol
    fdpsprovided by Xenbase
    Official Full Name
    farnesyl diphosphate synthaseprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-6456603
    See related
    Ensembl:ENSXETG00000040625
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See fdps in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (146371326..146390708)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016685203.1 (119..4674)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene CDC like kinase 2 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 4 Neighboring gene pyruvate kinase L/R Neighboring gene RUN and SH3 domain containing 1 Neighboring gene ash1 (absent, small, or homeotic)-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC108224

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity, transferring alkyl or aryl (other than methyl) groups IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    farnesyl pyrophosphate synthase
    Names
    farnesyl diphosphate synthase (farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase)
    NP_001015867.1
    XP_031746288.1
    XP_031746289.1
    XP_031746290.1
    XP_031746292.1
    XP_031746293.1
    XP_031746294.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015867.1 → NP_001015867.1  farnesyl pyrophosphate synthase

      See identical proteins and their annotated locations for NP_001015867.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090384
      UniProtKB/TrEMBL
      A0A1B8XU66, Q5EAL0
      Conserved Domains (1) summary
      pfam00348
      Location:40 → 303
      polyprenyl_synt; Polyprenyl synthetase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      146371326..146390708
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031890428.1 → XP_031746288.1  farnesyl pyrophosphate synthase isoform X1

      UniProtKB/TrEMBL
      A0A6I8SCG3, A0A8J1ILE9
      Related
      ENSXETP00000090947.2, ENSXETT00000072505.2
      Conserved Domains (1) summary
      pfam00348
      Location:114 → 377
      polyprenyl_synt; Polyprenyl synthetase

    2. XM_031890434.1 → XP_031746294.1  farnesyl pyrophosphate synthase isoform X6

      UniProtKB/TrEMBL
      A0A1B8XU66, Q5EAL0
      Conserved Domains (1) summary
      pfam00348
      Location:40 → 303
      polyprenyl_synt; Polyprenyl synthetase

    3. XM_031890432.1 → XP_031746292.1  farnesyl pyrophosphate synthase isoform X4

      UniProtKB/TrEMBL
      A0A1B8XU66, A0A803K8F6
      Related
      ENSXETP00000116616.1, ENSXETT00000106418.1
      Conserved Domains (1) summary
      pfam00348
      Location:67 → 328
      polyprenyl_synt; Polyprenyl synthetase

    4. XM_031890429.1 → XP_031746289.1  farnesyl pyrophosphate synthase isoform X2

      UniProtKB/TrEMBL
      A0A1B8XU66, A0A6I8QKN8
      Related
      ENSXETP00000073558.2, ENSXETT00000097154.2
      Conserved Domains (1) summary
      pfam00348
      Location:91 → 354
      polyprenyl_synt; Polyprenyl synthetase

    5. XM_031890430.1 → XP_031746290.1  farnesyl pyrophosphate synthase isoform X3

      UniProtKB/TrEMBL
      A0A1B8XU66, A0A8J1INE6
      Conserved Domains (1) summary
      pfam00348
      Location:81 → 344
      polyprenyl_synt; Polyprenyl synthetase

    6. XM_031890433.1 → XP_031746293.1  farnesyl pyrophosphate synthase isoform X5

      UniProtKB/TrEMBL
      A0A1B8XU66, A0A8J1ILF3
      Conserved Domains (1) summary
      pfam00348
      Location:45 → 308
      polyprenyl_synt; Polyprenyl synthetase
    Nucleotide Protein Strain
    Heading Accession and Version

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