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    btf3l4 basic transcription factor 3-like 4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496686, updated on 5-Mar-2024

    Summary

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    Official Symbol
    btf3l4provided by Xenbase
    Official Full Name
    basic transcription factor 3-like 4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-948236
    See related
    Ensembl:ENSXETG00000008056
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See btf3l4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (96550595..96563847)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (86385029..86398680)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene RAB3B, member RAS oncogene family Neighboring gene thioredoxin domain containing 12 (endoplasmic reticulum) Neighboring gene zinc finger FYVE-type containing 9 Neighboring gene coiled-coil and C2 domain containing 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription factor BTF3 homolog 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011243.1 → NP_001011243.1  transcription factor BTF3 homolog 4

      See identical proteins and their annotated locations for NP_001011243.1

      Status: PROVISIONAL

      Source sequence(s)
      BC087817
      UniProtKB/Swiss-Prot
      Q5M8V0
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      96550595..96563847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012960998.3 → XP_012816452.1  transcription factor BTF3 homolog 4 isoform X1

      See identical proteins and their annotated locations for XP_012816452.1

      UniProtKB/Swiss-Prot
      Q5M8V0
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    2. XM_012960996.3 → XP_012816450.1  transcription factor BTF3 homolog 4 isoform X1

      See identical proteins and their annotated locations for XP_012816450.1

      UniProtKB/Swiss-Prot
      Q5M8V0
      Related
      ENSXETP00000017657.3, ENSXETT00000017657.5
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    3. XM_012960997.3 → XP_012816451.1  transcription factor BTF3 homolog 4 isoform X1

      See identical proteins and their annotated locations for XP_012816451.1

      UniProtKB/Swiss-Prot
      Q5M8V0
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain

    4. XM_012960999.2 → XP_012816453.1  transcription factor BTF3 homolog 4 isoform X1

      See identical proteins and their annotated locations for XP_012816453.1

      UniProtKB/Swiss-Prot
      Q5M8V0
      Conserved Domains (1) summary
      pfam01849
      Location:38 → 91
      NAC; NAC domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5M8V0.1 GenPept UniProtKB/Swiss-Prot:Q5M8V0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.