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    ptafr platelet activating factor receptor [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 493365, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ptafrprovided by Xenbase
    Official Full Name
    platelet activating factor receptorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-968925
    See related
    Ensembl:ENSXETG00000012892
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    pafr
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (79281785..79296351)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (53495204..53510347)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene pumilio RNA binding family member 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member C8 Neighboring gene EYA transcriptional coactivator and phosphatase 3 Neighboring gene X-linked Kx blood group related 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC79467

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables platelet activating factor receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    platelet-activating factor receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008002.1 → NP_001008003.1  platelet-activating factor receptor

      See identical proteins and their annotated locations for NP_001008003.1

      Status: PROVISIONAL

      Source sequence(s)
      BC080881
      UniProtKB/TrEMBL
      Q66JK3
      Conserved Domains (1) summary
      cd15147
      Location:25 → 315
      7tmA_PAFR; platelet-activating factor receptor, member of the class A family of seven-transmembrane G protein-coupled receptors

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      79281785..79296351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956811.3 → XP_012812265.1  platelet-activating factor receptor isoform X1

      See identical proteins and their annotated locations for XP_012812265.1

      UniProtKB/TrEMBL
      Q66JK3
      Related
      ENSXETP00000115842.1, ENSXETT00000115990.1
      Conserved Domains (1) summary
      cd15147
      Location:25 → 315
      7tmA_PAFR; platelet-activating factor receptor, member of the class A family of seven-transmembrane G protein-coupled receptors

    2. XM_018091192.2 → XP_017946681.1  platelet-activating factor receptor isoform X2

      UniProtKB/TrEMBL
      F6WY76
      Related
      ENSXETP00000028210.4, ENSXETT00000028210.5
      Conserved Domains (1) summary
      cd15147
      Location:25 → 315
      7tmA_PAFR; platelet-activating factor receptor, member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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