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    rps12 ribosomal protein S12 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 493270, updated on 5-Mar-2024

    Summary

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    Official Symbol
    rps12provided by Xenbase
    Official Full Name
    ribosomal protein S12provided by Xenbase
    Primary source
    Xenbase:XB-GENE-972800
    See related
    Ensembl:ENSXETG00000000109
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    rps12-a; rps12-b
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (70604376..70609792)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (35725196..35730677, complement)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene vanin 1 Neighboring gene solute carrier family 18, subfamily B, member 1 Neighboring gene small nucleolar RNA SNORD101 Neighboring gene small nucleolar RNA SNORD100 Neighboring gene small nucleolar RNA SNORD100 Neighboring gene EYA transcriptional coactivator and phosphatase 4 Neighboring gene transcription factor 21

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC89830

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS12; 40S ribosomal protein S12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008435.2 → NP_001008435.1  small ribosomal subunit protein eS12

      See identical proteins and their annotated locations for NP_001008435.1

      Status: PROVISIONAL

      Source sequence(s)
      BC080154
      UniProtKB/TrEMBL
      F6XDJ1, Q68EP7
      Related
      ENSXETP00000065031.1, ENSXETT00000091770.2
      Conserved Domains (1) summary
      pfam01248
      Location:16 → 111
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      70604376..70609792
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012962911.2 → XP_012818365.1  40S ribosomal protein S12 isoform X1

      UniProtKB/TrEMBL
      A0A8J0SE13, F6XDJ1
      Conserved Domains (1) summary
      pfam01248
      Location:5 → 100
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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