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    LOC4802929 protein SHQ1 homolog [ Drosophila pseudoobscura ]

    Gene ID: 4802929, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC4802929
    Gene description
    protein SHQ1 homolog
    See related
    EnsemblRapid:LOC4802929
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila pseudoobscura
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (27232371..27234711, complement)

    Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene centromere protein J Neighboring gene melanoma-associated antigen 9 Neighboring gene putative epidermal cell surface receptor Neighboring gene phosphatidylinositol-binding clathrin assembly protein LAP Neighboring gene uncharacterized LOC4802931

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
    2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in box H/ACA snoRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SHQ1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_Dpse_MV25 Primary Assembly

    Genomic

    1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

      Range
      27232371..27234711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001359708.5 → XP_001359745.3  protein SHQ1 homolog

      UniProtKB/TrEMBL
      A0A6I8URX7
      Related
      XP_001359745.3, XM_001359708.5
      Conserved Domains (1) summary
      pfam04925
      Location:335 → 487
      SHQ1; SHQ1 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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