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    srsf5a serine/arginine-rich splicing factor 5 alpha [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448104, updated on 7-Sep-2023

    Summary

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    Official Symbol
    srsf5aprovided by Xenbase
    Official Full Name
    serine/arginine-rich splicing factor 5 alphaprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5954653
    See related
    Ensembl:ENSXETG00000017937
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ck5; ddd; ebs2; pUF23; sfrs6; krt5.1
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (109566462..109583949, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (89295325..89311194, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene NFKB inhibitor alpha Neighboring gene major histocompatibility complex, class 1, UC alpha chain Neighboring gene actinin alpha 1 Neighboring gene DDB1 and CUL4 associated factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC69488

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor 5 alpha
    Names
    splicing factor, arginine/serine-rich 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005638.1 → NP_001005638.1  serine/arginine-rich splicing factor 5 alpha

      See identical proteins and their annotated locations for NP_001005638.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074634
      UniProtKB/TrEMBL
      F6UTD6, F7AV75, F7B6E5, Q6GL71
      Related
      ENSXETP00000038885.2, ENSXETT00000038885.4
      Conserved Domains (2) summary
      cd12337
      Location:5 → 73
      RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:117 → 188
      RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      109566462..109583949 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012968197.3 → XP_012823651.1  serine/arginine-rich splicing factor 5 alpha isoform X4

      See identical proteins and their annotated locations for XP_012823651.1

      UniProtKB/TrEMBL
      F6UTD6, F7AV75, Q28DE1
      Conserved Domains (2) summary
      cd12337
      Location:5 → 73
      RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:116 → 187
      RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    2. XM_031890314.1 → XP_031746174.1  serine/arginine-rich splicing factor 5 alpha isoform X1

      UniProtKB/TrEMBL
      A0A8J1IL43, F6UTD6, F7AV75
      Conserved Domains (2) summary
      cd12337
      Location:40 → 108
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:152 → 223
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    3. XM_012968196.3 → XP_012823650.1  serine/arginine-rich splicing factor 5 alpha isoform X3

      See identical proteins and their annotated locations for XP_012823650.1

      UniProtKB/TrEMBL
      F6UTD6, F7AV75, F7B6E5, Q6GL71
      Conserved Domains (2) summary
      cd12337
      Location:5 → 73
      RRM1_SRSF4_like; RNA recognition motif 1 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:117 → 188
      RRM2_SRSF4_like; RNA recognition motif 2 in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins

    4. XM_031890315.1 → XP_031746175.1  serine/arginine-rich splicing factor 5 alpha isoform X2

      UniProtKB/TrEMBL
      A0A8J1IN43, F6UTD6, F7AV75
      Conserved Domains (2) summary
      cd12337
      Location:40 → 108
      RRM1_SRSF4_like; RNA recognition motif 1 (RRM1) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
      cd12600
      Location:151 → 222
      RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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