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    clmnb calmin b [ Danio rerio (zebrafish) ]

    Gene ID: 445211, updated on 27-Mar-2024

    Summary

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    Official Symbol
    clmnbprovided by ZNC
    Official Full Name
    calmin bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040801-124
    See related
    Ensembl:ENSDARG00000043667 AllianceGenome:ZFIN:ZDB-GENE-040801-124
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    clmn; im:7149399; zgc:100997
    Summary
    Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in actin filament; actin filament bundle; and cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See clmnb in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (10498568..10520212)
    105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (10511715..10532886)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene glutaredoxin 5 homolog (S. cerevisiae) Neighboring gene lincRNA gene 5888 Neighboring gene serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1, like Neighboring gene serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    calmin; uncharacterized protein LOC445211
    Names
    calmin-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001003605.2 → NP_001003605.1  uncharacterized protein LOC445211

      See identical proteins and their annotated locations for NP_001003605.1

      Status: PREDICTED

      Source sequence(s)
      BC078322
      UniProtKB/TrEMBL
      Q6DBX6
      Related
      ENSDARP00000064113.3, ENSDART00000064114.5
      Conserved Domains (1) summary
      pfam00307
      Location:29 → 130
      CH; Calponin homology (CH) domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      10498568..10520212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009294581.3 → XP_009292856.1  calmin isoform X3

      UniProtKB/TrEMBL
      A0A8M3AT29
      Conserved Domains (1) summary
      pfam00307
      Location:29 → 130
      CH; Calponin homology (CH) domain

    2. XM_009294580.3 → XP_009292855.1  calmin isoform X1

      UniProtKB/TrEMBL
      A0A2R8QQ29, A0A8M3AW29
      Related
      ENSDARP00000154972.1, ENSDART00000192985.1
      Conserved Domains (1) summary
      pfam00307
      Location:29 → 130
      CH; Calponin homology (CH) domain

    3. XM_021468400.1 → XP_021324075.1  calmin isoform X2

      UniProtKB/TrEMBL
      A0A8M9PSL8
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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