psmd9 proteasome 26S subunit, non-ATPase 9 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: psmd9provided by ZNC
Official Full Name: proteasome 26S subunit, non-ATPase 9provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-431
See related: Ensembl:ENSDARG00000006300 AllianceGenome:ZFIN:ZDB-GENE-030131-431
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:92643; wu:fb30g07
Summary: Predicted to be involved in proteasome regulatory particle assembly. Predicted to be active in cytoplasm and nucleus. Orthologous to human PSMD9 (proteasome 26S subunit, non-ATPase 9). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (72003301..72011167)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (71757231..71765099)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

AI415997 (e-PCR)
- UniSTS:206633

fb30g07.x1 (e-PCR)
- UniSTS:190394

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in proteasome regulatory particle assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within proteasome regulatory particle assembly	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within proteolysis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
part_of proteasome complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 26S proteasome non-ATPase regulatory subunit 9

Names: proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001002436.2 → NP_001002436.2 26S proteasome non-ATPase regulatory subunit 9

Status: VALIDATED

Source sequence(s)

BC076129, CU499328, CU571069

UniProtKB/TrEMBL

A0A8M1N0I7, F1R7L1, Q6DH53

Related

ENSDARP00000025305.5, ENSDART00000012918.7

Conserved Domains (2) summary

COG0265
Location:50 → 198

DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

cd00989
Location:117 → 193

PDZ_metalloprotease; PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

72003301..72011167

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005169066.4 → XP_005169123.1 26S proteasome non-ATPase regulatory subunit 9 isoform X1

UniProtKB/TrEMBL

A0A8M2BGF5, Q6DH53

Conserved Domains (2) summary

COG0265
Location:49 → 197

DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

cd00989
Location:116 → 192

PDZ_metalloprotease; PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ ...