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    CG5516 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 41940, updated on 4-Apr-2024

    Summary

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    Official Symbol
    CG5516provided by FlyBase
    Primary source
    FLYBASE:FBgn0038389
    Locus tag
    Dmel_CG5516
    See related
    AllianceGenome:FB:FBgn0038389
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5516
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Is expressed in organism. Orthologous to human ZCCHC10 (zinc finger CCHC-type containing 10). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    89A8-89A8; 3-58 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (15963884..15964761)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (11789606..11790483)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Synapse-associated protein 47kD Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Retinoblastoma-family protein 2 Neighboring gene moira Neighboring gene Helicase 89B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Retinoblastoma family 2 is required in vivo for the tissue-specific repression of dE2F2 target genes. Stevaux O, et al. Cell Cycle, 2005 Sep. PMID 16082225
    2. Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. Dottorini T, et al. BMC Bioinformatics, 2011 Jan 26. PMID 21269436, Free PMC Article
    3. An Integrative Analysis of the InR/PI3K/Akt Network Identifies the Dynamic Response to Insulin Signaling. Vinayagam A, et al. Cell Rep, 2016 Sep 13. PMID 27626673, Free PMC Article
    4. Comprehensive Identification and Alternative Splicing of Microexons in Drosophila. Pang TL, et al. Front Genet, 2021. PMID 33859668, Free PMC Article
    5. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article

    See all (27) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5516-PA
    CG5516-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      15963884..15964761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_142258.4 → NP_650515.1  uncharacterized protein Dmel_CG5516, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650515.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VF05
      Related
      FBpp0082666
      Conserved Domains (1) summary
      pfam13917
      Location:27 → 59
      zf-CCHC_3; Zinc knuckle

    2. NM_001202299.2 → NP_001189228.1  uncharacterized protein Dmel_CG5516, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189228.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VF05
      Conserved Domains (1) summary
      pfam13917
      Location:27 → 59
      zf-CCHC_3; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VF05 Q9VF05

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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