susd1 sushi domain containing 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: susd1provided by Xenbase
Official Full Name: sushi domain containing 1provided by Xenbase
Primary source: Xenbase:XB-GENE-944710
See related: Ensembl:ENSXETG00000002215
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (108123453..108182810, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (95880061..95935359, complement)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sushi domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_203891.1 → NP_989222.1 sushi domain-containing protein 1 precursor

See identical proteins and their annotated locations for NP_989222.1

Status: PROVISIONAL

Source sequence(s)

BC063189

UniProtKB/TrEMBL

A0A6I8Q5K2, A0A803KBB4, Q6P4Z4

Related

ENSXETP00000063667.3, ENSXETT00000063044.3

Conserved Domains (5) summary

cd00033
Location:406 → 462

CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

smart00179
Location:172 → 204

EGF_CA; Calcium-binding EGF-like domain

PHA02927
Location:190 → 394

PHA02927; secreted complement-binding protein; Provisional

cd00054
Location:122 → 157

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

cl21504
Location:39 → 66

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...