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    nodal3.1 nodal homolog 3, gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 394458, updated on 23-Nov-2023

    Summary

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    Official Symbol
    nodal3.1provided by Xenbase
    Official Full Name
    nodal homolog 3, gene 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5964399
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    nr3; nr4; Xnr3; Xnr4; Xnr-3; Xnr-4; nr3-A; nr3-B; nodal4; Xtnr3-A; xtnr3-b; nodal3-A; nodal3-B
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    Genomic context

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    See nodal3.1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (132081088..132083628)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (121706289..121708829)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100491437 Neighboring gene transforming, acidic coiled-coil containing protein 1 Neighboring gene nodal homolog 3-C Neighboring gene nodal homolog 3-A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus. Gupta R, et al. Dev Biol, 2014 Nov 1. PMID 25205067, Free PMC Article
    2. Effects of NR1 splicing on NR1/NR3B-type excitatory glycine receptors. Cavara NA, et al. BMC Neurosci, 2009 Apr 6. PMID 19348678, Free PMC Article
    3. Monomeric mature protein of Nodal-related 3 activates Xbra expression. Haramoto Y, et al. Dev Genes Evol, 2007 Jan. PMID 17089091
    4. Two distinct domains in pro-region of Nodal-related 3 are essential for BMP inhibition. Haramoto Y, et al. Biochem Biophys Res Commun, 2006 Jul 28. PMID 16762322
    5. Xenopus tropicalis nodal-related gene 3 regulates BMP signaling: an essential role for the pro-region. Haramoto Y, et al. Dev Biol, 2004 Jan 1. PMID 14697360

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables cytokine activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within gastrulation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nodal homolog 3-B
    Names
    Nodal homolog 3-A
    Nodal homolog 4
    nodal-related protein 3-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_203533.1 → NP_988864.1  nodal homolog 3-B precursor

      See identical proteins and their annotated locations for NP_988864.1

      Status: PROVISIONAL

      Source sequence(s)
      AB093328
      UniProtKB/Swiss-Prot
      Q800B9
      UniProtKB/TrEMBL
      A0A6I8PZG9
      Conserved Domains (2) summary
      smart00204
      Location:299 → 397
      TGFB; Transforming growth factor-beta (TGF-beta) family
      pfam00688
      Location:53 → 139
      TGFb_propeptide; TGF-beta propeptide

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      132081088..132083628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q800B9.1 GenPept UniProtKB/Swiss-Prot:Q800B9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases