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    RGD1563667 similar to TDPOZ3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365855, updated on 13-Aug-2019

    Summary

    Official Symbol
    RGD1563667provided by RGD
    Official Full Name
    similar to TDPOZ3provided by RGD
    Primary source
    RGD:1563667
    See related
    Ensembl:ENSRNOG00000037315
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tdpoz-T2
    Expression
    Biased expression in Testes (RPKM 9.8), Kidney (RPKM 4.5) and 7 other tissues See more

    Genomic context

    See RGD1563667 in Genome Data Viewer
    Location:
    9q38
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (195152284..195554013, complement)
    106 current Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (117465991..117467757, complement)
    106 current Rn_Celera (GCF_000002265.2) Unplaced Scaffold NW_001085137.1 (4919..7096)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 9 NC_005108.3 (116933941..116936124, complement)

    Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene similar to TDPOZ2 Neighboring gene TD and POZ domain-containing protein 4-like Neighboring gene TD and POZ domain-containing protein 4-like Neighboring gene selenium-binding protein 1 Neighboring gene similar to TDPOZ2 Neighboring gene similar to Zinc finger CCCH-type domain-containing protein 11A Neighboring gene thioesterase superfamily member 4 Neighboring gene thioesterase superfamily member 5

    Chromosome 9 - NC_005108.4Genomic Context describing neighboring genes Neighboring gene erythrocyte membrane protein band 4.1-like 3 Neighboring gene similar to TD and POZ domain containing 2 Neighboring gene similar to TD and POZ domain containing 2 Neighboring gene uncharacterized LOC102552880 Neighboring gene zinc finger protein 161 Neighboring gene uncharacterized LOC108351986 Neighboring gene A-kinase anchor inhibitor 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    ubiquitin protein ligase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    proteasome-mediated ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of proteolysis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    RAF domain and POZ/BTB containing protein T2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100985.1NP_001094455.1  RAF domain and POZ/BTB containing protein T2

      See identical proteins and their annotated locations for NP_001094455.1

      Status: PROVISIONAL

      Source sequence(s)
      AY902367
      UniProtKB/TrEMBL
      A1KZS4
      Conserved Domains (4) summary
      smart00225
      Location:189287
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14734
      Location:287348
      SPOP_C; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00651
      Location:180284
      BTB; BTB/POZ domain
      cl02446
      Location:16154
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

      Range
      195152284..195554013 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005108.4 Reference Rnor_6.0 Primary Assembly

      Range
      117465991..117467757 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017596875.1XP_017452364.1  RAF domain and POZ/BTB containing protein T2 isoform X1

      UniProtKB/TrEMBL
      E9PTZ3
      Related
      ENSRNOP00000040923.5, ENSRNOT00000048323.5

    Alternate Rn_Celera

    Genomic

    1. NW_001085137.1 Alternate Rn_Celera

      Range
      4919..7096
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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