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    SPBC16H5.08c ATP-binding cassette sub-family F protein [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540078, updated on 7-Apr-2024

    Summary

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    Gene symbol
    SPBC16H5.08c
    Gene description
    ATP-binding cassette sub-family F protein
    Primary source
    PomBase:SPBC16H5.08c
    Locus tag
    SPBC16H5.08c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (2284321..2286432)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative ATP-dependent RNA helicase Prp43 Neighboring gene putative alpha-1,2-mannosyltransferase Omh2 Neighboring gene serine/threonine protein phosphatase Ppa2 Neighboring gene ubiquinol-cytochrome-c reductase complex subunit 5 Neighboring gene uncharacterized protein Neighboring gene putative cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA. Zhang K, et al. Science, 2011 Mar 25. PMID 21436456, Free PMC Article
    2. Comprehensive proteomics analysis reveals new substrates and regulators of the fission yeast clp1/cdc14 phosphatase. Chen JS, et al. Mol Cell Proteomics, 2013 May. PMID 23297348, Free PMC Article
    3. A Two-step Protein Quality Control Pathway for a Misfolded DJ-1 Variant in Fission Yeast. Mathiassen SG, et al. J Biol Chem, 2015 Aug 21. PMID 26152728, Free PMC Article
    4. Proximity-dependent biotinylation mediated by TurboID to identify protein-protein interaction networks in yeast. Larochelle M, et al. J Cell Sci, 2019 May 31. PMID 31064814
    5. A central role for TOR signalling in a yeast model for juvenile CLN3 disease. Bond ME, et al. Microb Cell, 2015 Nov 11. PMID 28357272, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ATP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ATP hydrolysis activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosome biogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family F protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2284321..2286432
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021847.2 → NP_595939.1  ATP-binding cassette sub-family F protein [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595939.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42943
      Conserved Domains (3) summary
      cd03221
      Location:388 → 586
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      COG0488
      Location:73 → 604
      Uup; ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
      pfam12848
      Location:288 → 375
      ABC_tran_Xtn; ABC transporter
    Nucleotide Protein
    Heading Accession and Version

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