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    SPCC285.03 putative ATP-dependent RNA helicase Dbp6 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538809, updated on 13-Mar-2024

    Summary

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    Gene symbol
    SPCC285.03
    Gene description
    putative ATP-dependent RNA helicase Dbp6
    Primary source
    PomBase:SPCC285.03
    Locus tag
    SPCC285.03
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (1797921..1799933)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene putative adenosine 5'-monophosphoramidase Neighboring gene protein Cox18 Neighboring gene miscRNA Neighboring gene putative NADPH quinone oxidoreductase/ARE-binding protein Neighboring gene putative MVB sorting pathway protein Neighboring gene miscRNA Neighboring gene putative transthyretin Neighboring gene putative purine nucleoside transmembrane transporter Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic profiling and functional characterization of post-translational modifications of the fission yeast RNA exosome. Telekawa C, et al. Nucleic Acids Res, 2018 Nov 30. PMID 30321377, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA helicase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative ATP-dependent RNA helicase Dbp6

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1797921..1799933
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023323.2 → NP_588332.1  putative ATP-dependent RNA helicase Dbp6 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588332.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74491, P78908, Q76PD3
      Conserved Domains (3) summary
      PRK01297
      Location:45 → 535
      PRK01297; ATP-dependent RNA helicase RhlB; Provisional
      pfam00271
      Location:416 → 532
      Helicase_C; Helicase conserved C-terminal domain
      cl21455
      Location:128 → 380
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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