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    sumv-2 Protein sumv-2 [ Caenorhabditis elegans ]

    Gene ID: 24104625, updated on 23-Nov-2023

    Summary

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    Gene symbol
    sumv-2
    Gene description
    Protein sumv-2
    Primary source
    WormBase:WBGene00018812
    Locus tag
    CELE_F54D11.2
    See related
    AllianceGenome:WB:WBGene00018812
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in histone H4 acetylation and positive regulation of transcription by RNA polymerase II. Predicted to be part of NSL complex. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: V
    Exon count:
    7
    Sequence:
    Chromosome: V; NC_003283.11 (4617938..4628539)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Bms1-type G domain-containing protein Neighboring gene DEK_C domain-containing protein Neighboring gene Phosphoethanolamine N-methyltransferase 2 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence of a MOF histone acetyltransferase-containing NSL complex in C. elegans. Hoe M, et al. Worm, 2014 Oct-Dec. PMID 26430553, Free PMC Article
    2. SUMV-1 antagonizes the activity of synthetic multivulva genes in Caenorhabditis elegans. Yücel D, et al. Dev Biol, 2014 Aug 15. PMID 24882710
    3. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
    4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of NSL complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Protein sumv-2
    NP_001256043.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      4617938..4628539
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269114.4 → NP_001256043.1  Protein sumv-2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256043.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q22992
      Conserved Domains (2) summary
      pfam05466
      Location:43 → 231
      BASP1; Brain acid soluble protein 1 (BASP1 protein)
      cl14649
      Location:460 → 534
      BRO1_Alix_like; Protein-interacting Bro1-like domain of mammalian Alix and related domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q22992.2

    Gene LinkOut

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