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    bigr-1 HAD family phosphatase [ Caenorhabditis elegans ]

    Gene ID: 174706, updated on 4-May-2023

    Summary

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    Gene symbol
    bigr-1
    Gene description
    HAD family phosphatase
    Primary source
    WormBase:WBGene00009512
    Locus tag
    CELE_F37H8.3
    See related
    AllianceGenome:WB:WBGene00009512
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Is expressed in intestine and ventral nerve cord. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003280.10 (11181654..11183147)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene Uncharacterized protein Neighboring gene Transcription factor lir-3 Neighboring gene Sidoreflexin Neighboring gene GILT-like protein F37H8.5 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    HAD family phosphatase
    NP_001254294.1
    • Partially confirmed by transcript evidence
    NP_001254295.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      11181654..11183147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267365.2 → NP_001254294.1  HAD family phosphatase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254294.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17860
      Conserved Domains (2) summary
      TIGR02247
      Location:6 → 223
      HAD-1A3-hyp; epoxide hydrolase N-terminal domain-like phosphatase
      cl21460
      Location:101 → 209
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001267366.3 → NP_001254295.1  HAD family phosphatase [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254295.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7WNA1
      Conserved Domains (1) summary
      cl21460
      Location:4 → 98
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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