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    ftr92 finTRIM family, member 92 [ Danio rerio (zebrafish) ]

    Gene ID: 101886570, updated on 27-Mar-2024

    Summary

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    Official Symbol
    ftr92provided by ZNC
    Official Full Name
    finTRIM family, member 92provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-110411-92
    See related
    Ensembl:ENSDARG00000095825 AllianceGenome:ZFIN:ZDB-GENE-110411-92
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch73-67c22.3
    Orthologs
    all
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    Genomic context

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    See ftr92 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (45885780..45900749, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (46041631..46055295, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene synapse associated protein 1 Neighboring gene F-box and leucine-rich repeat protein 5 Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 2a Neighboring gene mucolipin TRP cation channel 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Fish antiviral tripartite motif (TRIM) proteins. Langevin C, et al. Fish Shellfish Immunol, 2019 Mar. PMID 30550990
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tripartite motif-containing protein 16-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      45885780..45900749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005174166.4 → XP_005174223.1  tripartite motif-containing protein 16-like

      UniProtKB/TrEMBL
      A0A8M2BLS7
      Related
      ENSDARP00000125062.1, ENSDART00000149263.3
      Conserved Domains (2) summary
      cd16040
      Location:156 → 333
      SPRY_PRY_SNTX; Stonustoxin subunit alpha or SNTX subunit alpha
      cl02600
      Location:28 → 92
      HTH_MerR-SF; Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases