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    cdr2b cerebellar degeneration-related protein 2b [ Danio rerio (zebrafish) ]

    Gene ID: 101886304, updated on 27-Mar-2024

    Summary

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    Official Symbol
    cdr2bprovided by ZNC
    Official Full Name
    cerebellar degeneration-related protein 2bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101203-4
    See related
    Ensembl:ENSDARG00000037359 AllianceGenome:ZFIN:ZDB-GENE-101203-4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch1073-272o11.3
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (1000340..1010521)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (964780..974685)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene KDEL endoplasmic reticulum protein retention receptor 2b Neighboring gene methyltransferase 9, His-X-His N1-histidine Neighboring gene polymerase (RNA) III (DNA directed) polypeptide E Neighboring gene WD repeat domain phosphoinositide-interacting protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    cerebellar degeneration-related protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      1000340..1010521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169431.4 → XP_005169488.1  cerebellar degeneration-related protein 2

      UniProtKB/TrEMBL
      A0A8M2BGQ9, E7F704
      Related
      ENSDARP00000054362.4, ENSDART00000054363.6
      Conserved Domains (2) summary
      pfam10408
      Location:133 → 208
      Ufd2P_core; Ubiquitin elongating factor core
      cl11473
      Location:30 → 120
      DUF1043; Protein of unknown function (DUF1043)
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases