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    LOC101885876 receptor-type tyrosine-protein phosphatase eta-like [ Danio rerio (zebrafish) ]

    Gene ID: 101885876, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC101885876
    Gene description
    receptor-type tyrosine-protein phosphatase eta-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC101885876 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (39702995..39723488)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (39815251..39835601)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene Ig kappa chain V-VI region NQ2-6.1-like Neighboring gene immunoglobulin kappa variable 1-8-like Neighboring gene glucose-fructose oxidoreductase domain containing 1 Neighboring gene solute carrier family 12 member 7b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    receptor-type tyrosine-protein phosphatase eta-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      39702995..39723488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017354025.2 → XP_017209514.1  receptor-type tyrosine-protein phosphatase eta-like

      UniProtKB/TrEMBL
      A0A8M6YVV5
      Conserved Domains (4) summary
      cd00037
      Location:20 → 100
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00063
      Location:604 → 688
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:332 → 411
      fn3; Fibronectin type III domain
      cl02432
      Location:209 → 242
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain

    2. XM_009297666.3 → XP_009295941.1  receptor-type tyrosine-protein phosphatase eta-like

      See identical proteins and their annotated locations for XP_009295941.1

      UniProtKB/TrEMBL
      A0A8M6YVV5
      Conserved Domains (4) summary
      cd00037
      Location:20 → 100
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      cd00063
      Location:604 → 688
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:332 → 411
      fn3; Fibronectin type III domain
      cl02432
      Location:209 → 242
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
    Nucleotide Protein
    Heading Accession and Version

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