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    LOC101734916 nucleolar transcription factor 1-A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101734916, updated on 25-Jan-2024

    Summary

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    Official Symbol
    LOC101734916provided by Xenbase
    Official Full Name
    nucleolar transcription factor 1-Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-29088147
    See related
    Ensembl:ENSXETG00000049140
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (15022712..15031125)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (9312527..9316512, complement)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41), gene 2 Neighboring gene U4 spliceosomal RNA Neighboring gene integrin subunit alpha 2b Neighboring gene family with sequence similarity 171 member A2 Neighboring gene granulin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in intracellular organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nucleolar transcription factor 1-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      15022712..15031125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004918648.4 → XP_004918705.2  nucleolar transcription factor 1-A

      UniProtKB/TrEMBL
      A0A803JT49
      Related
      ENSXETP00000111182.1, ENSXETT00000118782.1
      Conserved Domains (3) summary
      PHA03307
      Location:346 → 638
      PHA03307; transcriptional regulator ICP4; Provisional
      PRK08581
      Location:199 → 474
      PRK08581; amidase domain-containing protein
      cd00084
      Location:105 → 169
      HMG-box; High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I ...
    Nucleotide Protein Strain
    Heading Accession and Version

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    Molecular Biology Databases