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    arid4b AT-rich interaction domain 4B [ Danio rerio (zebrafish) ]

    Gene ID: 100537923, updated on 27-Mar-2024

    Summary

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    Official Symbol
    arid4bprovided by ZNC
    Official Full Name
    AT-rich interaction domain 4Bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160607-1
    See related
    Ensembl:ENSDARG00000090656 AllianceGenome:ZFIN:ZDB-GENE-160607-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    tomm20a; zgc:73165
    Summary
    Orthologous to human ARID4B (AT-rich interaction domain 4B). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See arid4b in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (49596441..49721520, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (49305814..49431257, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 2 binding protein 2a Neighboring gene translocase of outer mitochondrial membrane 20 Neighboring gene geranylgeranyl diphosphate synthase 1 Neighboring gene beta-1,3-N-acetylgalactosaminyltransferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 4B
    Names
    AT rich interactive domain 4B (RBP1-like)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      49596441..49721520 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005173033.4 → XP_005173090.1  AT-rich interactive domain-containing protein 4B isoform X2

      UniProtKB/TrEMBL
      A0A8M2BKC0, F1R2N8
      Related
      ENSDARP00000107839.3, ENSDART00000128415.3
      Conserved Domains (4) summary
      smart00333
      Location:60 → 109
      TUDOR; Tudor domain
      smart01014
      Location:309 → 394
      ARID; ARID/BRIGHT DNA binding domain
      pfam08169
      Location:170 → 264
      RBB1NT; RBB1NT (NUC162) domain
      pfam11717
      Location:543 → 596
      Tudor-knot; RNA binding activity-knot of a chromodomain

    2. XM_005173032.4 → XP_005173089.1  AT-rich interactive domain-containing protein 4B isoform X1

      UniProtKB/TrEMBL
      A0A8M2BKB0
      Conserved Domains (4) summary
      smart00333
      Location:60 → 109
      TUDOR; Tudor domain
      smart01014
      Location:309 → 394
      ARID; ARID/BRIGHT DNA binding domain
      pfam08169
      Location:170 → 264
      RBB1NT; RBB1NT (NUC162) domain
      pfam11717
      Location:543 → 596
      Tudor-knot; RNA binding activity-knot of a chromodomain

    3. XM_003199758.5 → XP_003199806.2  AT-rich interactive domain-containing protein 4B isoform X3

      UniProtKB/TrEMBL
      A0A8M1RMF8
      Related
      ENSDARP00000157304.1, ENSDART00000189805.1
      Conserved Domains (3) summary
      smart00333
      Location:60 → 109
      TUDOR; Tudor domain
      smart01014
      Location:309 → 394
      ARID; ARID/BRIGHT DNA binding domain
      pfam08169
      Location:170 → 264
      RBB1NT; RBB1NT (NUC162) domain
    Nucleotide Protein
    Heading Accession and Version

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